Boho, who won her second Liga Iberdrola Player of the Week recently, continued where she left off but her second double of the season failed to help the visitors avoid defeat.
Chechu Martinez's side started in fine form when the Equatorial Guinea international scored the opener just six minutes into the game.
In the 29th minute, Cote d'Ivoire's Guehai teed up Boho to hand the visitors a 2-0 lead at the Ciudad Deportiva Luis de Sol.
However, the hosts fought back when Merel van Dongen reduced the deficit thanks to Priscila Borja's assist in the 33rd minute.
Maria Pry's side continued their revival after the half-time interval as Laura levelled matters six minutes after the restart, before Yaiza Relea scored in the 61st minute to seal the win.
Guehai, who made her 11th appearance, and Boho were taken off in the 59th and 64th minute respectively, and the latter has now scored eight goals in 28 outings this term.
Despite the defeat, Logrono are 12th on the log with 26 points from 29 games and will need a win against 14th-placed Albacete on the final day to confirm their top-flight status.