A brace from Sikiru Alimi helped the hosts silence the visitors on away goals rule after aggregate scores stood at 3-3.
The tension soaked encounter saw the hosts wait until the 70th minute to break the deadlock through the former Sunshine Stars’ striker.
And with three minutes to the end of the game, Alimi profited from a defensive mix-up from the visitors to send them crashing.
Samuel Onyango’s double in the first leg has given K’Ogalo a 3-1 victory in the first leg, but Solomon Ogbeide’s men came out good at the Nnamdi Azikwe Stadium to erase the deficit.
With this victory, Lobi are through to the group phase of the championship, while the Kenyans will slug it out in the play-off.