His 63rd-minute penalty levelled scores against the visitors who took the lead through Mark Uth before Christian Pulisic sealed maximum points at Signal Iduna Park.
He has now scored 13 goals in his last five seasons in the German elite division to show for his consistency.
Aubameyang is second behind Bayern Munich’s Robert Lewandowski who leads the goalscorer’s chart with 15 goals.
Aside from this, the Gabon international has played a total of 47 shots which is second behind Lewandowski’s 59.
The victory takes Peter Stöger’s men to the third position with 28 points from 17 games with their next league game on January 14 against Wolfsburg.