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Elsewhere, Barcelona top their group - and AC Milan go through after a 0-0 draw with Ajax.
Dortmund go through, with Arsenal runners up.
And Chelsea go through, with Schalke runner sup.
Ah, the joy of qualifying top of your group. Here are some Dortmund players who know all about it...
Sebastian Kehl told Sky: "It was very exciting. We knew we needed that second goal. The coach substituted offensively. It was tough, Marseille defended very well and their players stood compact.
"But hey, I don't care about that anymore. At the end, we even won this group and it was a super successful day for us. Now we will have a beer at the bar in the hotel and I think we deserve that."
Jose Mourinho, meanwhile, said of Chelsea's win against Steaua:
"If we had scored a second goal we would have jumped to a different performance.'"
Meanwhile, some quotes from Schalke on their 2-0 win against Basel (which takes them through to the last 16 alongside Chelsea).
Kevin-Prince Boateng told Sky: "We played well again. We were stable, we waited, we were patient. I have to give a big, big compliment to the team, we did brilliant at times.“
Max Meyer also said: "We concentrated from the first minute. Our match was superb. Then they had the red card and everything went our way."
And Joel Matip on his offside goal remakred: "I was watching the linesman with one eye and I was suprised the referee did not whistle.“
"So, Arsene Wenger, is your glass half-full or half-empty? When the draw was made, second place behind Borussia Dortmund would not have been sneered at - but this was a real opportunity missed.
"Arsenal were in control in Naples but let it slip - and they paid a heavy price with their potential opponents in the last 16. They created few opportunities and were punished when Gonzalo Higuain scored, with Jose Callejon's late, late strike counting for little. Ultimately, though, this was a fantastic Champions League Group, the first time three sides have finished on 12 points.
"Napoli were unfortunate and Dortmund lucky, while Arsenal probably got what they deserved for slackness on the final day."
"Chelsea beat Steaua Bucharest 1-0 courtesy of an early Demba Ba strike to progress top of Group E and ensure a favourable draw for the last 16 of the Champions League.
"But while the Blues kept a clean sheet on 41-year-old Mark Schwarzer's Champions League debut, the partnership of John Terry and David Luiz still looked shaky at times, leaving Jose Mourinho with plenty to ponder about his back line for the knockout stages."
Barcelona 6-1 Celtic
Chelsea 1-0 Steaua Bucharest
Napoli 2-0 Arsenal
Napoli 2-0 Arsenal
Marseille 1-2 Dortmund
Dortmund go through top of the group, while Arsenal qualify in second.
Chelsea 1-0 Steaua
Chelsea top Group E.
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